Decadal changes in biomass and distribution of key fisheries species on Newfoundland's Grand Banks.

Canadian fisheries management has embraced the precautionary approach and the incorporation of ecosystem information into decision-making processes. Accurate estimation of fish stock biomass is crucial for ensuring sustainable exploitation of marine resources. Spatio-temporal models can provide improved indices of biomass as they capture spatial and temporal correlations in data and can account for environmental factors influencing biomass distributions. In this study, we developed a spatio-temporal generalized additive model (st-GAM) to investigate the relationships between bottom temperature, depth, and the biomass of three key fished species on The Grand Banks: snow crab (Chionoecetes opilio), yellowtail flounder (Limanda ferruginea), and Atlantic cod (Gadus morhua). Our findings revealed changes in the centre of gravity of Atlantic cod that could be related to a northern shift of the species within the Grand Banks or to a faster recovery of the 2J3KL stock. Atlantic cod also displayed hyperaggregation behaviour with the species showing a continuous distribution over the Grand Banks when biomass is high. These findings suggest a joint stock assessment between the 2J3KL and 3NO stocks would be advisable. However, barriers may need to be addressed to achieve collaboration between the two distinct regulatory bodies (i.e., DFO and NAFO) in charge of managing the stocks. Snow crab and yellowtail flounder centres of gravity have remained relatively constant over time. We also estimated novel indices of biomass, informed by environmental factors. Our study represents a step towards ecosystem-based fisheries management for the highly dynamic Grand Banks.

Reproductive behavior of Atlantic halibut (Hippoglossus hippoglossus) interpreted from electronic tags.

Reproductive timing, location, and behavior are important characteristics that determine marine population dynamics, structure, and resilience to threats, including fishing and climate change. It is challenging to evaluate factors driving variability in these reproductive traits in wild fishes because of the difficulty observing individuals in their natural environments. In the present study, we used high-resolution depth, temperature, and acceleration time series recorded by pop-up satellite archival tags to (1) identify and characterize patterns in depth and acceleration that may be indicative of spawning events in large Atlantic halibut (Hippoglossus hippoglossus), and (2) estimate the effects of individual traits (body size and sex) and environmental factors (location and temperature) on spawning time and frequency. Unique rapid rises observed in the winter depth profiles were interpreted as spawning events. The initiation of the first presumed spawning rise was negatively correlated to water temperature experienced during the prespawning season, suggesting that currently increasing water temperature in the Gulf of St. Lawrence may induce phenological change in halibut spawning time. The number of rises of batch-spawning females was unrelated to female body size. The present study demonstrates how electronic tagging can be used for in-depth characterization of timing, location, and behaviors associated with spawning in a large flatfish species. Such information can inform spatiotemporal management and conservation measures aiming to protect species from directed fishing and by-catch during spawning.

SNP Panel and Genomic Sex Identification in Atlantic Halibut (Hippoglossus hippoglossus).

The ability to identify sex is necessary in population biology for a proper understanding of the dynamics of a population. In Atlantic halibut, phenotypic sex identification is not possible due to the lack of significant external morphological differences. We developed an Illumina SNP panel for Atlantic halibut with 4000 SNPs spread evenly throughout the genome with a minor allele frequency MAF ≥ 0.4, except for N = 249 SNPs located in a sex-determining region on chromosome 12, N = 176 of these SNPs were selected to genetically identify male and female individuals using a DAPC analysis. The genomic identification of sex allows for non-lethal sex determination and validation of sex identification in the field. The SNP panel is a new genomic resource for Atlantic halibut that will make it possible to generate the genotypic data for the large number of individuals needed to estimate population abundance using genomics and the Close Kin Mark Recapture (CKMR) approach, an emerging component of fisheries management and stock monitoring.

Spatial variation in food web structure in a recovering marine ecosystem.

Spatial heterogeneity in food web structure and interactions may reconcile spatial variation in population and community dynamics in large marine ecosystems. In order to assess food web contributions to the different community recovery dynamics along the Newfoundland and Labrador shelf ecosystem, we quantified species interactions using stable isotope mixing models and food web metrics within three sub-regions. Representative samples of each species caught in trawls and plankton tows were analyzed for stomach contents and stable isotope ratios (δ15N and δ13C) to parameterize isotope mixing models. Regional variation, highlighted by the diets of three economically important species, was observed such that the southern region demonstrated a variety of trophic pathways of nutrient flow into the higher food web while the diets of fish in the northern regions were typically dominated by one or two pathways via dominant prey species, specifically shrimp (Pandalus sp.) and hyperiids. Food web metrics indicated that the low-diversity northern regions had higher connectance and shorter food chain lengths. This observed regional variation contributes to our understanding of the role of specific forage species to the ecosystem which is an essential contribution towards ecosystem-based management decisions.

Pelagic organisms avoid white, blue, and red artificial light from scientific instruments.

In situ observations of pelagic fish and zooplankton with optical instruments usually rely on external light sources. However, artificial light may attract or repulse marine organisms, which results in biased measurements. It is often assumed that most pelagic organisms do not perceive the red part of the visible spectrum and that red light can be used for underwater optical measurements of biological processes. Using hull-mounted echosounders above an acoustic probe or a baited video camera, each equipped with light sources of different colours (white, blue and red), we demonstrate that pelagic organisms in Arctic and temperate regions strongly avoid artificial light, including visible red light (575-700 nm), from instruments lowered in the water column. The density of organisms decreased by up to 99% when exposed to artificial light and the distance of avoidance varied from 23 to 94 m from the light source, depending on colours, irradiance levels and, possibly, species communities. We conclude that observations from optical and acoustic instruments, including baited cameras, using light sources with broad spectral composition in the 400-700 nm wavelengths do not capture the real state of the ecosystem and that they cannot be used alone for reliable abundance estimates or behavioural studies.

Spatial and ontogenetic variation in isotopic niche among recovering fish communities revealed by Bayesian modeling.

Exploitation and changing ocean conditions have resulted in altered species interactions and varied population dynamics within marine fish communities off northeast Newfoundland and southern Labrador, Canada. To understand contemporary species interactions, we quantified the isotopic niches, niche overlap, and ontogenetic niche change among seven dominant fish species using stable isotope analyses. Analyses used fishes from three regions differing in fish and prey diversities. Differences in fish and diet composition diversity among regions were found using Simpson's inverse diversity index. The regions of lowest diversities had higher instances of niche overlap and higher percentage of niche overlap area. The region of highest diversity had the widest spread of niches with greater distances from the community centroid. Ontogenetic shifts were observed such that larger individuals shifted towards the community centroid with the exception of Atlantic cod. Atlantic cod in particular was found to consistently be the top predator of the analyzed species. Our results reveal: (a) overlap in isotopic niches and spread within niche space was correlated with fish and diet diversity; (b) ontogenetic shifts are important when considering a species' niche and quantifying spatial variation in community niche profiles.

First estimates of Greenland shark (Somniosus microcephalus) local abundances in Arctic waters.

Baited remote underwater video cameras were deployed in the Eastern Canadian Arctic, for the purpose of estimating local densities of the long-lived Greenland shark within five deep-water, data-poor regions of interest for fisheries development and marine conservation in Nunavut, Canada. A total of 31 camera deployments occurred between July-September in 2015 and 2016 during joint exploratory fishing and scientific cruises. Greenland sharks appeared at 80% of deployments. A total of 142 individuals were identified and no individuals were observed in more than one deployment. Estimates of Greenland shark abundance and biomass were calculated from averaged times of first arrival, video-derived swimming speed and length data, and local current speed estimates. Density estimates varied 1-15 fold among regions; being highest in warmer (>0 °C), deeper areas and lowest in shallow, sub-zero temperature regions. These baited camera results illustrate the ubiquity of this elusive species and suggest that Nunavut's Lancaster Sound eco-zone may be of particular importance for Greenland shark, a potentially vulnerable Arctic species.

Spatial scale of similarity as an indicator of metacommunity stability in exploited marine systems.

The spatial scale of similarity among fish communities is characteristically large in temperate marine systems: connectivity is enhanced by high rates of dispersal during the larval/juvenile stages and the increased mobility of large-bodied fish. A larger spatial scale of similarity (low beta diversity) is advantageous in heavily exploited systems because locally depleted populations are more likely to be "rescued" by neighboring areas. We explored whether the spatial scale of similarity changed from 1970 to 2006 due to overfishing of dominant, large-bodied groundfish across a 300 000-km2 region of the Northwest Atlantic. Annually, similarities among communities decayed slowly with increasing geographic distance in this open system, but through time the decorrelation distance declined by 33%, concomitant with widespread reductions in biomass, body size, and community evenness. The decline in connectivity stemmed from an erosion of community similarity among local subregions separated by distances as small as 100 km. Larger fish, of the same species, contribute proportionally more viable offspring, so observed body size reductions will have affected maternal output. The cumulative effect of nonlinear maternal influences on egg/larval quality may have compromised the spatial scale of effective larval dispersal, which may account for the delayed recovery of certain member species. Our study adds strong support for using the spatial scale of similarity as an indicator of metacommunity stability both to understand the spatial impacts of exploitation and to refine how spatial structure is used in management plans.

Transient dynamics of an altered large marine ecosystem.

Overfishing of large-bodied benthic fishes and their subsequent population collapses on the Scotian Shelf of Canada's east coast and elsewhere resulted in restructuring of entire food webs now dominated by planktivorous, forage fish species and macroinvertebrates. Despite the imposition of strict management measures in force since the early 1990s, the Scotian Shelf ecosystem has not reverted back to its former structure. Here we provide evidence of the transient nature of this ecosystem and its current return path towards benthic fish species domination. The prolonged duration of the altered food web, and its current recovery, was and is being governed by the oscillatory, runaway consumption dynamics of the forage fish complex. These erupting forage species, which reached biomass levels 900% greater than those prevalent during the pre-collapse years of large benthic predators, are now in decline, having outstripped their zooplankton food supply. This dampening, and the associated reduction in the intensity of predation, was accompanied by lagged increases in species abundances at both lower and higher trophic levels, first witnessed in zooplankton and then in large-bodied predators, all consistent with a return towards the earlier ecosystem structure. We conclude that the reversibility of perturbed ecosystems can occur and that this bodes well for other collapsed fisheries.

Breaking Bergmann's rule: truncation of Northwest Atlantic marine fish body sizes.

A strictly species-centric view of human impacts on ecological communities may conceal important trait changes key to ecosystem functioning and stability. Analyses of body size and community composition data for 326 Northwest Atlantic fish species sampled across > 900000 km2 over three decades revealed a rapid and widespread reduction of body sizes driven by declines within species and changes in relative abundances. The changes were unrelated to species richness but of sufficient magnitude to eliminate biogeographic scale gradients of increasing body size with latitude commonly characterized as Bergmann's rule. These changes have persisted despite reduced potential for intraspecific competition and favorable bottom water temperatures, both of which should lead to increased growth rates. The aggregate body sizes in these Northwest Atlantic fish communities may now represent a mismatch between the environmental variability characteristic of the Northwest Atlantic and the historical body size, life history traits, and productivity of species across this region. We discuss how these changes may jeopardize the potential for recovery of these important temperate/subarctic ecosystems.

From sea to sea: Canada's three oceans of biodiversity.

Evaluating and understanding biodiversity in marine ecosystems are both necessary and challenging for conservation. This paper compiles and summarizes current knowledge of the diversity of marine taxa in Canada's three oceans while recognizing that this compilation is incomplete and will change in the future. That Canada has the longest coastline in the world and incorporates distinctly different biogeographic provinces and ecoregions (e.g., temperate through ice-covered areas) constrains this analysis. The taxonomic groups presented here include microbes, phytoplankton, macroalgae, zooplankton, benthic infauna, fishes, and marine mammals. The minimum number of species or taxa compiled here is 15,988 for the three Canadian oceans. However, this number clearly underestimates in several ways the total number of taxa present. First, there are significant gaps in the published literature. Second, the diversity of many habitats has not been compiled for all taxonomic groups (e.g., intertidal rocky shores, deep sea), and data compilations are based on short-term, directed research programs or longer-term monitoring activities with limited spatial resolution. Third, the biodiversity of large organisms is well known, but this is not true of smaller organisms. Finally, the greatest constraint on this summary is the willingness and capacity of those who collected the data to make it available to those interested in biodiversity meta-analyses. Confirmation of identities and intercomparison of studies are also constrained by the disturbing rate of decline in the number of taxonomists and systematists specializing on marine taxa in Canada. This decline is mostly the result of retirements of current specialists and to a lack of training and employment opportunities for new ones. Considering the difficulties encountered in compiling an overview of biogeographic data and the diversity of species or taxa in Canada's three oceans, this synthesis is intended to serve as a biodiversity baseline for a new program on marine biodiversity, the Canadian Healthy Ocean Network. A major effort needs to be undertaken to establish a complete baseline of Canadian marine biodiversity of all taxonomic groups, especially if we are to understand and conserve this part of Canada's natural heritage.

Decline in top predator body size and changing climate alter trophic structure in an oceanic ecosystem.

Globally, overfishing large-bodied groundfish populations has resulted in substantial increases in their prey populations. Where it has been examined, the effects of overfishing have cascaded down the food chain. In an intensively fished area on the western Scotian Shelf, Northwest Atlantic, the biomass of prey species increased exponentially (doubling time of 11 years) even though the aggregate biomass of their predators remained stable over 38 years. Concomitant reductions in herbivorous zooplankton and increases in phytoplankton were also evident. This anomalous trophic pattern led us to examine how declines in predator body size (approx. 60% in body mass since the early 1970s) and climatic regime influenced lower trophic levels. The increase in prey biomass was associated primarily with declines in predator body size and secondarily to an increase in stratification. Sea surface temperature and predator biomass had no influence. A regression model explained 65 per cent of prey biomass variability. Trait-mediated effects, namely a reduction in predator size, resulted in a weakening of top predation pressure. Increased stratification may have enhanced growing conditions for prey fish. Size-selective harvesting under changing climatic conditions initiated a trophic restructuring of the food chain, the effects of which may have influenced three trophic levels.

An intertidal snail shows a dramatic size increase over the past century.

Changes in the shell architecture of marine snails enhance defenses and greatly improve survival against predators. In the northwest Atlantic Ocean, shorter and thicker shells have been reported for several species following the introduction of predatory Carcinus maenas crabs early in the 20th century. But we report that the shell lengths of Nucella lapillus actually increased by an average of 22.6% over the past century, with no evidence of shell thickening after correcting for shell length. The increases in shell length were greatest on sheltered shores, highlighting the interaction between wave exposure and the sampling period. Comparisons were based on archived shells collected in 1915-1922 from sites that were resampled in 2007. N. lapillus is an important member of North Atlantic marine ecosystems, and our results suggest that the impacts of historical changes in species' key morphological traits on marine ecosystems remain underappreciated.

Temporal dynamics within a contemporary latitudinal diversity gradient.

Poleward declines in species diversity [latitudinal diversity gradients (LDG)] remain among the oldest and most widespread of macroecological patterns. However, their contemporary dynamics remain largely unexplored even though changing ecological conditions, including global change, may modify LDG and their respective ecosystems. Here, we examine temporal variation within a temperate Northwest Atlantic LDG using 31 years of annual fisheries-independent surveys and explore its dynamics in relation to a dominant climate signal [the wintertime North Atlantic Oscillation (NAO)] that varies interannually and alters the latitudinal gradient of Northwest Atlantic continental shelf bottom water temperatures. We found that the slopes of the annual LDG vary dramatically due to changes in geographic distributions of 100+ species, variations that are concealed within the cumulative, static LDG. These changes are strongly associated with changes in NAO sign and strength. This is the first illustration of temporal dynamics in a contemporary LDG and the first demonstration of the speed at which local environmental variations can alter an LDG. Our findings underscore the need to investigate factors that modify LDG separately from those that contribute to their origins.